provDebugR - A Time-Travelling Debugger

Uses provenance post-execution to help the user understand and debug their script by providing functions to look at intermediate steps and data values, their forwards and backwards lineage, and to understand the steps leading up to warning and error messages. 'provDebugR' uses provenance produced by 'rdtLite' (available on CRAN), stored in PROV-JSON format.

Last updated 4 years ago

3.64 score 22 scripts 113 downloads

rdtLite - Provenance Collector

Defines functions that can be used to collect provenance as an 'R' script executes or during a console session. The output is a text file in 'PROV-JSON' format.

Last updated 2 years ago

3.56 score 2 stars 36 scripts 286 downloads

provViz - Provenance Visualizer

Displays provenance graphically for provenance collected by the 'rdt' or 'rdtLite' packages, or other tools providing compatible PROV JSON output. The exact format of the JSON created by 'rdt' and 'rdtLite' is described in <https://github.com/End-to-end-provenance/ExtendedProvJson>. More information about rdtLite and associated tools is available at <https://github.com/End-to-end-provenance/> and Barbara Lerner, Emery Boose, and Luis Perez (2018), Using Introspection to Collect Provenance in R, Informatics, <doi: 10.3390/informatics5010012>.

Last updated 2 years ago

3.48 score 1 packages 2 scripts 266 downloads

provParseR - Pulls Information from Prov.Json Files

R functions to access provenance information collected by 'rdt' or 'rdtLite'. The information is stored inside a 'ProvInfo' object and can be accessed through a collection of functions that will return the requested data. The exact format of the JSON created by 'rdt' and 'rdtLite' is described in <https://github.com/End-to-end-provenance/ExtendedProvJson>.

Last updated 2 years ago

3.20 score 5 packages 21 scripts 243 downloads

provExplainR - Compare Provenance Collections to Explain Changed Script Outputs

Inspects provenance collected by the 'rdt' or 'rdtLite' packages, or other tools providing compatible PROV JSON output created by the execution of a script, and find differences between two provenance collections. Factors under examination included the hardware and software used to execute the script, versions of attached libraries, use of global variables, modified inputs and outputs, and changes in main and sourced scripts. Based on detected changes, 'provExplainR' can be used to study how these factors affect the behavior of the script and generate a promising diagnosis of the causes of different script results. More information about 'rdtLite' and associated tools is available at <https://github.com/End-to-end-provenance/> and Barbara Lerner, Emery Boose, and Luis Perez (2018), Using Introspection to Collect Provenance in R, Informatics, <doi:10.3390/informatics5010012>.

Last updated 2 years ago

3.00 score 8 scripts 176 downloads

provGraphR - Creates Adjacency Matrices for Lineage Searches

Creates and manages a provenance graph corresponding to the provenance created by the 'rdtLite' package, which collects provenance from R scripts. 'rdtLite' is available on CRAN. The provenance format is an extension of the W3C PROV JSON format (<https://www.w3.org/Submission/2013/SUBM-prov-json-20130424/>). The extended JSON provenance format is described in <https://github.com/End-to-end-provenance/ExtendedProvJson>.

Last updated 2 years ago

2.18 score 1 packages 4 scripts 150 downloads